Quantitative shotgun proteome analysis by direct infusion | Nature Methods
Chromatogram libraries improve peptide detection and quantification by data independent acquisition mass spectrometry | Nature Communications
A streamlined platform for analyzing tera-scale DDA and DIA mass spectrometry data enables highly sensitive immunopeptidomics | Nature Communications
Sensitive Immunopeptidomics by Leveraging Available Large-Scale Multi-HLA Spectral Libraries, Data-Independent Acquisition, and MS/MS Prediction - ScienceDirect
Label-free quantification in ion mobility–enhanced data-independent acquisition proteomics | Nature Protocols
Implementing the reuse of public DIA proteomics datasets: from the PRIDE database to Expression Atlas | Scientific Data
Direct data-independent acquisition (direct DIA) enables substantially improved label-free quantitative proteomics in Arabidopsis | bioRxiv
New Nature Communications publication by Mann & Theis Groups harnesses the benefits of large-scale peptide collisional cross section (CCS) measurements and deep learning for 4D-proteomics
A data-independent acquisition-based global phosphoproteomics system enables deep profiling | Nature Communications
Benchmarking Bioinformatics Pipelines in Data-Independent Acquisition Mass Spectrometry for Immunopeptidomics - ScienceDirect
Multiplexed peptide analysis using data-independent acquisition and Skyline | Nature Protocols
Data-independent acquisition mass spectrometry (DIA-MS) for proteomic applications in oncology - Molecular Omics (RSC Publishing) DOI:10.1039/D0MO00072H
Mass-spectrometric exploration of proteome structure and function | Nature
DIA-Umpire: comprehensive computational framework for data-independent acquisition proteomics | Nature Methods
Technical comparison of DDA and different types of DIA in a biological... | Download Scientific Diagram
DIA mass spectrometry | Nature Methods
Use of Hybrid Data-Dependent and -Independent Acquisition Spectral Libraries Empowers Dual-Proteome Profiling | Journal of Proteome Research
GitHub - vdemichev/DiaNN: DIA-NN - a universal automated software suite for DIA proteomics data analysis.
Data-independent acquisition mass spectrometry (DIA-MS) for proteomic applications in oncology - Molecular Omics (RSC Publishing) DOI:10.1039/D0MO00072H
DDA and DIA are the common data acquisition strategies in shotgun... | Download Scientific Diagram
DIAproteomics: A Multifunctional Data Analysis Pipeline for Data-Independent Acquisition Proteomics and Peptidomics | Journal of Proteome Research
Data-independent acquisition method for ubiquitinome analysis reveals regulation of circadian biology | Nature Communications
